{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://michalie.github.io/bio-foundation-models-wiki/schema.json",
  "title": "Biological Foundation Models catalog",
  "type": "array",
  "items": {
    "type": "object",
    "additionalProperties": false,
    "required": [
      "id",
      "date_added",
      "name",
      "modality",
      "description",
      "paper_links",
      "code_links",
      "status",
      "io",
      "use_cases",
      "year",
      "canonical",
      "noncommercial",
      "verified",
      "sources",
      "audit_state",
      "audit_priority",
      "audit_note",
      "audit_source"
    ],
    "properties": {
      "id": {"type": "string", "pattern": "^bfm-[a-z0-9]+(?:-[a-z0-9]+)*$"},
      "date_added": {"type": "string", "format": "date"},
      "date_modified": {"type": "string", "format": "date"},
      "aliases": {"type": "array", "items": {"type": "string"}, "uniqueItems": true},
      "name": {"type": "string", "minLength": 1},
      "modality": {
        "enum": ["dna", "rna", "protein", "complex", "molecule", "singlecell", "spatial", "multimodal", "platform", "benchmark"]
      },
      "description": {"type": "string", "minLength": 1},
      "paper_links": {"$ref": "#/$defs/links"},
      "code_links": {"$ref": "#/$defs/links"},
      "status": {"type": "string", "minLength": 1},
      "io": {"type": "string"},
      "use_cases": {"type": "string", "minLength": 1},
      "year": {"type": "string", "pattern": "^(?:|19[0-9]{2}|20[0-9]{2})$"},
      "canonical": {"type": "boolean"},
      "noncommercial": {"type": "boolean"},
      "verified": {"type": "string", "format": "date"},
      "sources": {
        "type": "array",
        "minItems": 1,
        "items": {"type": "string", "format": "uri", "pattern": "^https?://"},
        "uniqueItems": true
      },
      "audit_state": {"enum": ["verified", "verified_with_limits", "hold"]},
      "audit_priority": {"enum": ["P1", "P2", "P3", "P4"]},
      "audit_note": {"type": "string", "minLength": 1},
      "audit_source": {
        "type": "string",
        "pattern": "^evidence/source-audit/foundation_(?:initial|residual_mod[0-2])\\.md$"
      }
    }
  },
  "$defs": {
    "links": {
      "type": "array",
      "items": {
        "type": "object",
        "additionalProperties": false,
        "required": ["label", "url"],
        "properties": {
          "label": {"type": "string", "minLength": 1},
          "url": {"type": "string", "format": "uri", "pattern": "^https?://"}
        }
      }
    }
  }
}